In silico Transcriptome (iTranscriptome)
Geo-seq: 3D Transcriptome of the mouse embryo at gastrulation
| General information of this gene: |
| Gene symbol: |
|
| Gene ID: |
|
| Ensembl ID: |
|
| Synonyms: |
|
| Gene Type: |
|
| Description: |
|
|
| * Values are log10(FPKM+1) transformed |
| 3D plot files (Epiblast/Ectoderm) of this gene: |
To download the 3D mapping file, please click here
How to use the downloaded files for 3D visualization?
×
-
- - Download the .tar.gz file from the download link
- - Uncompress the downloaded file
- - Download the visualization software from the VAA3D
- - Load all individual images into the software (VAA3D)
- (For more information about the reconstruction, please refer to our manual User Manual)
|
Key features |
| - High resolution |
- More sensitive |
| - 2D & 3D visualization |
- Searchable web service |
| |
|
Query and display the expression pattern of a query gene in either a corn plot or a 3D embryo model
Search for genes that share similar expression patterns of a query gene.
Search for genes using a query pattern (Choose one of 5 predefined patterns or input interested pattern).
Calculate the enrichment score for a query gene list based on ranked gene expression of each sample.
