In silico Transcriptome (iTranscriptome)

Geo-seq: 3D Transcriptome of the mouse embryo at gastrulation

Querying the interested expression pattern

Select one pre-defined patterns



Pattern1	Pattern2	Pattern3	Pattern4	Pattern5

OR, input an interested pattern index in the below box (~30 seconds): (Format Example Clear)

The format of the input:

E5.5 stage
- The format of input values must contain 3 rows.
- The values in each row must be separated by only one white space.
- The columes from left to right represent En1, Epi1, Epi2, En2.
- The last row only need to input two value (Epi and En).
- The rows from up to down represent 3->1 layers
- The minimum is recommented as 0, and the maximun as the number of all embryo samples from this stage.
E6.0 stage
- The format of input values must contain 5 rows.
- The values in each row must be separated by only one white space.
- The columes from left to right represent EA, A, P, EP.
- The last row only need to input two value (AP and EAP).
- The rows from up to down represent 5->1 layers
- The minimum is recommented as 0, and the maximun as the number of all embryo samples from this stage.
E6.5 stage
- The format of input values must contain 8 rows.
- The values in each row must be separated by only one white space.
- The columes from left to right represent EA, A, P, EP.
- The last row only need to input two value (AP and EAP).
- The rows from up to down represent 8->1 layers
- The minimum is recommented as 0, and the maximun as the number of all embryo samples from this stage.
E7.0 stage
- The format of input values must contain 11 rows.
- The values in each row must be separated by only one white space.
- The columes from left to right represent EA, A, L, R, P, M, EP.
- The last row only need to input three values (EAP, A and P).
- The rows from up to down represent 11->1 layers
- The minimum is recommented as 0, and the maximun as the number of all embryo samples from this stage.
E7.5 stage
- The format of input values must contain 10 rows.
- The values in each row must be separated by only one white space.
- The columes from left to right represent EA, MA, A, L1, L2, R1, R2, P, MP, EP.
- The columes of row 2 and row 9 from left to right represent EA, MA, A, L, R, P, MP, EP.
- The top row only need to input four values (EA, MA, MP and EP).
- The last row only need to input three values (EAP, A and P).
- The rows from up to down represent 10->1 layers
- The minimum is recommented as 0, and the maximun as the number of all embryo samples from this stage.